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  • This dataset assembles historical information existing in public and private documentary archives. Taken together, these data contribute to the building of a knowledge base of the historical presence, extent and biogenic formations of European flat oyster ecosystems prior to and during the intensification of bottom fishing activities. To identify and recover such information requires significant resources and expertise. The establishment of a Historical Ecology Working Group under the umbrella of the Native Oyster Restoration Alliance in early 2020 presented a unique opportunity to coalesce interdisciplinary expertise and resources from multiple European countries to collate and interrogate historical data sources. To date, this is the only known dataset that evidences the past distribution, extent and characteristics of this seabed ecosystem across its full biogeographic range. The described datasets present qualitative and quantitative extracts from written records published between 1524-2022, which show: (1) estimated locations of past oyster fisheries and/or reef habitat across its full biogeographical range, with associated levels of confidence; (2) recorded extent of past reef habitats, and; (3) species associated with these habitats. This comprehensive historical analysis demonstrates that oyster reefs were once a dominant three-dimensional feature along much of the European coastline and some shallow shelf seas.